DMS footprinting - Dimethyl sulphate (DMS) is one of the oldest and most versatile chemical reagents used to probe RNA structure. - It was introduced for RNA structure mapping in 1980. This early method allowed detection of methylation by DMS at N 7 of guanosine and N 3 of cytidine nucleotide because of modification facilitate cleavage of the chain. - The sites of the methylation were determined by polyacrylamide gel electrophoresis (PAGE) analysis of end-labelled RNA. - Analogous method was used to footprint the binding of protein to DNA. - ...